Use the UCSC multiple sequence alignment and target genome annotation
Select one target species
Select one subject species
Select at least one out-group species
human(hg18)
mouse(mm8)
rat(rn4)
dog(canFam2)
zebrafish(danRer4)
D. melanogaster(dm2)
chicken(galGal3)
opossum(monDom4)
Saccharomyces cerevisiae(sacCer1)
chimpanzee(panTro2)
macaque(rheMac2)
mouse(mm8)
rat(rn4)
rabbit(oryCun1)
dog(canFam2)
cow(bosTau2)
armadillo(dasNov1)
elephant(loxAfr1)
tenrec(echTel1)
opossum(monDom4)
chicken(galGal2)
frog(xenTro1)
zebrafish(danRer3)
tetraodon(tetNig1)
fugu(fr1)
macaque(rheMac2)
mouse(mm8)
rat(rn4)
rabbit(oryCun1)
dog(canFam2)
cow(bosTau2)
armadillo(dasNov1)
elephant(loxAfr1)
tenrec(echTel1)
opossum(monDom4)
chicken(galGal2)
frog(xenTro1)
zebrafish(danRer3)
tetraodon(tetNig1)
fugu(fr1)
Select what kind of region you want:
single chromosome, single region
single chromosome, multiple region
chromosome_wise
multiple chromosome, multiple region
Query by gene accession ID
help
Or
Upload your multiple sequence alignment and target genome annotation
Upload the description of the species compared
The descript file
format
and
example
Upload the multiple sequence alignment file
The multiple sequence alignment
format
and
example
Upload the target genome annotation file
The annotation
format
and
example
Reference
Feng-Chi, Chen; Chueng-Jong, Chen; Trees-Juen Chuang* (2007). INDELSCAN: a web server for comparative identification of species-specific and non-species-specific insertion/deletion events. Nucleic Acids Research, 35 (Web Server issue):W633-8.
Acknowledgments
This work is supported by the Genomics Research Center, Academia Sinica, Taiwan; the National Health Research Institutes (NHRI), Taiwan (under contract NHRI-EX96-9408PC); National Science Council, Taiwan (under contract NSC 96-2628-B-001-005-MY3) (above to TJC); and NHRI intramural funding (to FCC).
Contact :
Dr. Trees-Juen Chuang
The Chimpanzee Lab.
,Genomics Research Center, Academia Sinica, Taipei 11529, Taiwan
INDELSCAN is maintained by
Chiuan-Jung Chen
Latest update: Apr 12, 2007 Server Site : 64